Figure S3A shows the green/red fluorescence ratios over time in a single experiment, while Figure S4B shows the average rate of increase in green/red fluorescence over three independent experiments. Fibroblasts carrying VCP mutations exhibit similar lipid peroxidation rates when compared to controls ( Figures S3A–S3C). These results suggest that uncoupling in these cells is not related to changes or alterations in lipid peroxidation Dactolisib mouse rates. Basal cellular ATP levels are determined by the rates of ATP production (oxidative phosphorylation and glycolysis) and

consumption. To monitor ATP levels in live VCP-deficient cells, we used a FRET-based ATP sensor. In a first subset of experiments, control and VCP KD SH-SY5Y cells were treated with 100 μM glycolytic inhibitor iodoacetic acid (IAA) to monitor the ATP levels generated from glycolysis and then with 0.2 μg/ml oligomycin to determine the ATP levels generated by the ATP synthase ( Figures 4A, 4B, and S4A). In a second group of measurements, ATP synthase was inhibited prior to inhibition of glycolysis ( Figure S4B). In all experiments, basal ATP levels were measured prior to treatment with inhibitors. Figure 4A shows traces from a representative experiment in which ATP levels were measured in untransfected, SCR,

and VCP KD cells. The relative ATP levels generated by glycolysis and the ATP synthase as GSK1120212 chemical structure seen as a reduction in the YFP/CFP ratio after addition of inhibitors are represented in Figure 4B. A not statistically significant decrease in ATP levels was observed in VCP KD cells after inhibition of glycolysis by IAA ( Figures 4B and S4A). However, ATP levels were significantly lower in VCP KD cells compared to controls after inhibition of ATP synthase by oligomycin ( Figure 4B and S4A) (YFP/CFP: untransfected = 0.21 ± 0.07, n = 3; SCR = 0.30 ± 0.05, n = 4; VCP KD = 0.04 ± 0.01, n = 4). Interestingly, when glycolysis was inhibited after ATP synthase, control and VCP KD SH-SY5Y cells showed no decrease in ATP levels in response to IAA ( Figure S4B). Due to the low efficiency of transfection in primary patient

fibroblasts, a bioluminescent assay based on the luciferin-luciferase system was used to detect the ATP levels in these cells. In all three patient fibroblast lines, ATP levels were significantly MTMR9 decreased compared to age-matched control fibroblasts (luminescence arbitrary units: patient 1 = 0.63 ± 0.05, n = 7; patient 2 = 0.66 ± 0.07, n = 5; patient 3 = 0.53 ± 0.09, n = 7; control 1 = 0.90 ± 0.09, n = 7; control 2 = 0.91 ± 0.03, n = 6; control 3 = 0.90 ± 0.06, n = 4) ( Figure 4C). These experiments show that VCP pathogenic mutations also lead to decreased ATP levels. The energy capacity was then measured in VCP-deficient fibroblasts to determine the cause of low ATP levels in these cells. The energy capacity of a cell is defined as the time between application of inhibitors of glycolysis/ATP-synthase (i.e., cessation of ATP production) and the time of cell lysis (i.