[23, 24] This means that magnetron sputtering approach allows de

[23, 24]. This means that magnetron sputtering approach allows deposition of the materials with the same stoichiometry as initial Silmitasertib cell line target. Figure 1 Refractive index variation for Si-rich Al 2 O 3 , pure amorphous Si, and Al 2

O 3 films. (a) Refractive index variation for pure amorphous Si and Al2O3 films as well as Si-rich-Al2O3 samples with different Si content, x = 0.50 (1), 0.22 (2), and 0.05 (3). (b) Simulated variation of the refractive index, n, taken at 2 eV, versus Si content (x) in Si-rich Al2O3 (solid line). The circle symbols of this curve represent experimental n values, used HKI-272 cell line for estimation of the x values. As for Si-rich Al2O3 films grown from both targets, their dispersion curves are found to be between the curves corresponded to pure Al2O3 and amorphous silicon. They demonstrate gradual shift toward the dependence for amorphous selleck inhibitor Si with Si content increase (Figure 1a). This means that the film can be considered rather as a mixture of Al2O3 and Si (or SiO x with x < 1), then a mixture of Al2O3 with SiO2 similar to the case described for Si-rich HfO2 films [20]. All the films were found to be amorphous as confirmed by Raman scattering and XRD data (see below). Thus, hereafter, we consider our Si-rich Al2O3 film as an effective medium, which macroscopic properties are determined by the relative fractions of Si and Al2O3, i.e., Si x (Al2O3)1−x . To predict the variation of refractive index n versus x,

the Bruggeman effective medium approximation was used based on the approach described in [25]. In this case, the variation of dielectric function (i.e.,

refractive index) is defined by the following two equations: (2) (3) where ε i and ν i are the complex optical dielectric function and volume fraction for the ith component, respectively; ν is the effective dielectric function corresponding to the measured value for the film. The results of this simulation are presented for the n taken at 2.0 eV (Figure 1b). The dots on this curve correspond to the experimental n values obtained by fitting of ellipsometry data (taken also at 2.0 eV). This approach allows rough Rucaparib estimation of the x variation along the film length (Figure 1b). Taking into account Eqs. (2) and (3) and the values of corresponding refractive indexes (Figure 1a), the relative fraction of Si phase was found to vary from x ≈ 0.92 (n = 3.22 ± 0.01; Si-rich side) to x ≈ 0.05 (n = 1.73 ± 0.01; Si-poor side) (Figure 1b). It should be noted that for x > 0.7, our films grown from Si and Al2O3 targets can be considered rather as Al2O3-rich Si films than Si-rich alumina. In this regard, hereafter, the samples with x < 0.7 will be only analyzed. Raman scattering spectra As-deposited films Since important information on the structure of amorphous/nanocrystalline silicon can be obtained from its Raman scattering spectra [26, 27], we investigated these spectra for as-deposited and annealed films versus x.

CrossRef 34 Landoni V, Saracino B, Marzi S, Gallucci M, Petronga

CrossRef 34. Landoni V, Saracino B, Marzi S, Gallucci M, Petrongari MG, Chianese E, Benassi M, Iaccarino G, Soriani A, Arcangeli G: A study of the effect of setup errors and organ motion on prostate cancer treatment with https://www.selleckchem.com/products/MDV3100.html IMRT. Int J Radiat Biol Oncol Phys 2006, 65: 587–594.CrossRef Competing

interests The authors declare that they have no competing interests. Authors’ contributions SM, GA, MB and VL conceived of the study and partecipated in its design and coordination. BS, MGP, SG and SA contributed with the enrollement of patients, were responsible of the radiotherapy treatments and collected the patient’s clinical data. SM and VL performed the radiobiological modelling and the statistical analyses, and wrote the manuscript. All authors read and approved the final draft.”
“Background Aggressive lymphoma

is known to be a highly chemosensitive NVP-HSP990 ic50 disease. Therefore, over the past few decades, constant attempts have been made to develop various types of combination chemotherapy including first generation combination chemotherapy with cyclophosphamide, doxorubicin, vincristine and prednisone (CHOP) [1]. However, particularly in patients with aggressive lymphoma in the higher International Prognostic Index (IPI) risk group, satisfactory outcomes have not been achieved, with a five-year survival of less than 50% [2]. Several retrospective studies demonstrated that the relative dose intensity (RDI) of combination chemotherapy significantly influences survival in aggressive lymphoma [3–7]. Moreover, rituximab, a chimeric NU7026 in vitro monoclonal anti-CD20 antibody combined with CHOP chemotherapy (R-CHOP) has improved outcome in patients Tenoxicam with diffuse

large B-cell lymphoma (DLBL) [8, 9]. Rituximab has direct, complement-dependent and antibody-dependent cellular cytotoxicity against B-cells. The drug also sensitizes B-lymphoma cells to chemotherapy [10]. Therefore, a combined approach with rituximab plus CHOP could conceivably modify the effects of RDI. However, there is no evidence that even in combination chemotherapy with rituximab that higher RDI improves the outcome for aggressive B-cell type lymphoma. Hence, in our study, we retrospectively analyzed the impact of the RDI of chemotherapy with R-CHOP as an initial treatment on the survival of patients with DLBL, and furthermore, we determined the factors influencing RDI. Methods Eligibility Patients were eligible if they had newly diagnosed DLBL according to the World Health Organization classification or the Revised European-American Lymphoma classification [11, 12]. As initial chemotherapy, they received R-CHOP with more than three consecutive courses between December 2003 and February 2008 at five institutions, Osaka City University Hospital, Osaka City General Hospital, Seichokai Fuchu Hospital, Saiseikai Nakatu Hospital and Wakakoukai Hospital. One hundred patients who had complete records of drug dose, time intervals, and prophylactic G-CSF use were deemed eligible for this study.

Values correspond to means

Values correspond to means FK506 in vivo ± SD (error bars) calculated 1, 2, 3 and 24 h after incubation with complex fermentation effluents of all three reactors from models F1 and F2 obtained during (Stab) initial model stabilization and (Sal) Salmonella infection periods (N = 6), compared to values measured after incubation with (–x–) S. Typhimurium N-15 in DMEM alone. Figure 4 HT29-MTX monolayer integrity in complex colonic environments

is affected by Salmonella infection and probiotic treatments. Tight junctions (in red) and FRAX597 nuclei (in blue) of HT29-MTX cells were stained with phalloidin and DAPI, respectively, after incubation for 90 min with distal reactor effluents of F1 retained at the end of (A, Stab) initial model stabilization, (B, Sal) Salmonella infection, (C, Ecol II) E. coli

L1000 and (D, Bif I) B. thermophilum RBL67 periods. Tight junctions were highly disrupted after incubation with effluents from Salmonella infection (Sal) compared to initial JSH-23 model stabilization periods (Stab). Complex reactor effluents affect TER across HT29-MTX monolayers Salmonella were detected neither in reactor effluents nor after invasion assays in samples obtained at the end of initial model stabilization periods (Stab). Mean TER across HT29-MTX monolayers measured after 1-3 h incubation with effluents from initial model stabilization periods Ureohydrolase (Stab) were consistent and similar for all reactors (251 ± 23 Ω cm2). Furthermore cellular tight junctions were unaffected after 90 min of incubation, as also demonstrated by confocal microscopy for distal reactor effluents of F1 (Figure 4A). 24 h post-incubation, a significant decrease of TER was recorded (Figure 3). A significantly (P < 0.05) higher TER was measured with transverse and distal effluents compared to proximal reactor effluents (Table 1), correlating with significantly increased SCFA concentrations in both R2 (177 ± 6 mM) and R3 (187 ± 20 mM) compared to R1 (141 ± 7 mM, Table 1). Salmonella invasion is a function of environmental factors and affects epithelial

integrity Upon infection of the three-stage continuous fermentation model with S. Typhimurium N-15 beads (Sal, Figure 2A), Salmonella concentrations in effluents steadily increased and stabilized at significantly (P < 0.01) higher levels in proximal (5.8 ± 0.3 log10 cfu/ml) and transverse (5.6 ± 0.5 log10 cfu/ml) compared to distal colon reactors (4.5 ± 0.7 log10 cfu/ml). Invasion efficiency expressed as percentage of cell-associated Salmonella, was significantly higher with effluents of R2 (0.6 ± 0.2%; P = 0.049) and R3 (1.3 ± 0.7%; P = 0.002) compared to R1 (0.2 ± 0.1%) [Sal, Figure 2C]. In contrast, invasion efficiency of pure cultures of Salmonella in buffered DMEM was up to 50-fold higher (9.8 ± 2.1%).

The present investigation demonstrated changes in temperature, ph

The present investigation demonstrated changes in temperature, physiochemical characteristics and bacterial population during composting process. This study also deals with the characterization of predominant bacterial genera isolated from different phases of composting. Biddlestone and Gray [19] reported that the complexity of degraded plant materials and quality of the final

product may depend upon the type of biomass. Therefore, various agricultural byproducts were used as raw material in order to provide an excellent substratum for the growth of microorganisms. All these supplements had high mineral and N content, which balance the relatively high C: N ratio of rice husk. Rice husk may supply K, Ca, Mg and other minerals along with C and silica [20]. In composting, this website C: N ratio was considered to be the most important parameter,

as it reflects the extent of the bio-transformations that took place in the compost in chemical terms [21]. In the beginning of composting the C: N ratio of agricultural byproducts was 31.1 and it was decreased to 11.4 at the end of composting (Table 1). This decline might be because of reduction of C, which is obviously due to evolution of CO2 during degradation of organic matter and increase in N due to mineralization of organic-N compound. Brito et al. [22] also observed a decline in C: N ratio from 36 to 14 at the end of composting. The C: N ratio less than 12 during the solid phase was https://www.selleckchem.com/products/Flavopiridol.html believed to be an indicator for the maturity of the compost [23, 24]. The temperature regime in the compost

LXH254 cost indicated that the organic materials passed through different phases like mesophilic, thermophilic, cooling and maturation (Figure 1) as already reported by Ishii et al. [25]. The temperature started dropping in the compost pile once the material was stabilized, which also indicated that the pile was becoming anaerobic and should be aerated by turning [26]. Therefore, turning was performed first on 15th day of composting, and then on every tenth day. The results indicated that processes like thorough mixing of the materials and turning enhanced the decomposition process. Moreover, if turning process failed to reheat the composting pile, oxyclozanide it showed that the composting material was biologically stable [27]. Nutrient status of mature compost The results showed a significant increase in minerals (w w-1) in agricultural byproducts composting (Table 1) and no gradual fluctuations were observed after 40th day. Janakiram and Sridevi [28] attempted the composting of Kattamanakku (Jatropha curcas) waste with slurries of cow dung by an aerobic composting method; the percentages of N, P, K, Na, Ca and Mg increased after 30 and 60 days of composting. The findings correlated with the present study. Similarly Felton et al. [29] reported that total P increased during the compost process.

On the basis of the jackknife validation, MHS performs poorly on

On the basis of the jackknife validation, MHS performs poorly on several organisms. M. genitalium represents a unique case; nearly 80% of its genes are essential. There is little difference between the AUC for the ideal sorting, the MHS sorting, and the random assortment. Even so, MHS produced a 38.8% sorting, with a p-value of 2 × 10-9 compared to random. It is unclear why H. influenzae and H. pylori and to a lesser extent E. coli performed poorly. This result suggests that these organisms may contain species specific essential genes. For H. pylori the authors of the initial essentiality screen note a surprising lack of overlap with the essential gene sets from

other organisms [44]. As the number of essential genes in H. pylori is in the same range as most of the other organisms in DEG, this could suggest an alternative set of essential see more genes. In the case of E. coli, we note that the number of essential genes is nearly double the average for the other DEG organisms, which likely reflects its status as one of the most well-studied bacteria. This larger set may confound the E. SAHA HDAC solubility dmso coli jackknifing validation. Somewhat paradoxically, these features may be beneficial for this analysis. The

outlier organisms may incorporate more diversity in our reference set of essential genes, increasing the likelihood of identification of diverse essential genes within wBm. This does come with the trade-off of increasing the false positive rate, however, this is mitigated by two factors. First, the design of the MHS assigns more confidence to genes conserved across multiple organisms, moving well supported essential gene predictions towards the top. Second, the pipeline for the rational drug design process utilizes the predictions of essential wBm genes to inform a manual selection of drug targets. A moderate false positive rate can be screened out based on manual analysis and pathway information. As an additional experiment, it could be informative to examine non-DEG genes BI 10773 predicted as essential in the jackknifing validation to identify essential genes missed by the knockout experiments. A gene conserved nearly universally across DEG but missing in a small number

of organisms may be useful to investigate under alternative experimental conditions. Genes identified by MHS are predicted Phosphatidylethanolamine N-methyltransferase to belong to a set of genes which are essential and broadly conserved across bacterial life. This set includes many targets of modern broad-spectrum antibiotics. A compound targeting genes from this class is more likely to produce antibiotics effective across a broad range of bacterial species. Though gene orthology does not specifically indicate drug cross-reactivity, the distribution of the targeted gene should be considered. While developing a novel broad-spectrum antibiotic would be advantageous, for this specific application such a compound may also come with negative side-effects. Ideally, a mass drug administration protocol against B.

At each time points as indicated, the fluorescent dyes (2 0 μM) w

At each time points as indicated, the fluorescent dyes (2.0 μM) were added into the culture media and cells were incubated for 15 min before micro-images were taken OICR-9429 datasheet under a fluorescent microscope (panel A, magnification × 200). Quantitative data for the percentage of dead cells (red-labeled cells) in the total cells (red plus green cells) were summarized in panel B as mean ± SEM from 5 microscopic fields). The asterisk indicates a MDV3100 significant difference (P < 0.01, Student t -test) as compared to the value at the 0 hour time point. The calcimimetic R-568-induced cell death is an apoptotic event in prostate cancer cells It has been shown that CaSR activation is involved in osteoblast

cell apoptosis [4] and R-568 treatment induces apoptotic

cell death in rat parathyroid cell [3]. Therefore, we asked if R-568-induced cell death was an apoptotic INCB018424 in vitro response in LNCaP and PC-3 cells. We utilized the most commonly used apoptotic markers, caspase-3 processing and PARP cleavage, in our next experiments. As shown in Fig 3 (panel A and panel B), R-568 treatment resulted in a remarkable processing of caspase-3 and a clear pattern of PARP cleavage in both LNCaP and PC-3 cells, indicating that R-568-induced cell death is an apoptotic response. Figure 3 R-568-induced cell death is an apoptotic response in prostate cancer cells. A&B LNCaP and PC-3 cells were treated with R-568 (50 μM) for different time period as indicated. Equal amounts of cellular proteins were subjected to Western blot assay to assess caspase-3 processing and PARP cleavage. Primary antibodies used are indicated on the left side. Actin blot served as the protein loading control. Data represent two different experiments. C LNCaP and PC-3 cells were seeded in 8-well chambered glass slides overnight. Following treatment with R-568 or S-568 at a dose of 50 μM for 24 h, cells were incubated with JC-1 (0.3 μg/ml) for 15 min Methane monooxygenase at 37C. Pictures were

taken under a fluorescent microscope. Magnification × 200. To further characterize R-568-induced apoptosis, we examined the change of mitochondrial membrane potential using the JC-1 dye, which accumulates in the mitochondria of viable cells as aggregates, which are fluorescent red in color. Conversely, in apoptotic cells, the mitochondrial potential collapses and the JC-1 dye could no longer accumulate in the mitochondria and remains in the cytoplasm in a monomeric form which fluoresces green. As shown in Fig 3C, treatment with R-568 but not S-568 induced a dramatic change of JC-1 color/distribution from red/puncture pattern to green/defused pattern, suggesting that R-568 treatment induced a severe damage to mitochondria, which is consistent with the data shown in Fig 3A and Fig 3B. Taken together, these data strongly suggest that the calcimimetic agent R-568 induced apoptotic cell death via a mitochondria-related mechanism.

​org/​10 ​1186/​gb-2005–6-12-r98]PubMedCrossRef 67 Butland G, Pe

​org/​10.​1186/​gb-2005–6-12-r98]PubMedCrossRef 67. Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A: Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 2005,433(7025):531–537. [http://​dx.​doi.​org/​10.​1038/​nature03239]PubMedCrossRef 68. Arifuzzaman M, Maeda

M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C Mori: Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res 2006,16(5):686–691. [http://​dx.​doi.​org/​10.​1101/​gr.​4527806]PubMedCrossRef 69. SP600125 chemical structure Rain JC, Selig L, Reuse HD, Battaglia V, Reverdy C, Simon S, Lenzen G, Petel F, Wojcik J, Schächter V, see more Chemama Y, Labigne A, Legrain P: The protein-protein interaction map of Helicobacter pylori. Nature 2001,409(6817):211–215. [http://​dx.​doi.​org/​10.​1038/​35051615]PubMedCrossRef

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Therefore, it is very important to monitor the

Therefore, it is very important to monitor the vacuum level in a vacuum device in order to maintain satisfying field emission properties. To measure the inner vacuum of the device, the vacuum gauge should be integrated to the vacuum device without affecting the device. MWCNTs c-Met inhibitor were used to fabricate the real time-monitoring vacuum gauge that satisfies these conditions. MWCNTs facilitate the fabrication

of a microstructure and this microstructure was used to build the micro vacuum gauge that could be set up in the device. Here, we demonstrate a simple screen-printed MWCNT device that combines the MWCNT field emission and MWCNT-based vacuum gauge for the measurement of the vacuum level. Also, the MWCNT vacuum gauge packaged with a vacuum device is used to measure the lifetime of the vacuum device. Methods The weight ratio of MWCNT/glass frit/indium tin oxide (ITO) powder/Ethyl cellulose/α-terpineol was 1:10:2:9:100. MWCNT powder grown by chemical vapor deposition was used as an electron emission source and glass frit as an inorganic binder to enhance the adhesion between MWCNT and

the substrate after firing. GSK2245840 MWCNT field emitters and the vacuum gauge were fabricated by the screen-printing process, where the field emitters were used as electron source. In the mixture of MWCNTs, the organic binder was premixed through an ultra-sonication for 30 min. Then, a three-roll milling process was carried out for mixing and dispersion of MWCNTs in the organic binder to form a polymer matrix. Mechanically well-dispersed MWCNT paste was printed onto an ITO glass. The residue of organic binder leads to problems such as outgassing and arcing during a field emission measurement. Therefore, organic materials in paste were removed by drying the printed MWCNT paste in the furnace for 30 min at 400°C to obtain stable emission characteristics. The gas sensing and field Methane monooxygenase emission areas were printed in cathode plate. The MWCNT paste film was fired at 350°C in nitrogen (N2) ambient in a furnace. Finally, the MWCNTs in

printed cathode layer are randomly distributed in a matrix material. Therefore, their emission characteristics are poor compared to, for instance, highly ordered arrays of vertically aligned MWCNTs. The surface treatment of printed MWCNTs was performed for vertical alignment as well as protrusion of MWCNTs from the surface to increase of field emission current and to improve the sensitivity of the vacuum gauge. The proposed vacuum device is a vacuum gauge with a field emitter structure, as shown in Figure 1. The MWCNT vacuum gauge area was connected with a pair of ITO electrodes on the glass plate of cathode to measure the AZD2171 electrical parameters. In addition, the molybdenum (Mo) patterned on glass was used as the anode plate. Two glass plates (cathode and anode glasses) were assembled by a distance of 240 μm. When the cathode plate was applied with high voltage, field emission current was obtained.

PubMedCrossRef 19 Garcia-Barros M, Paris F, Cordon-Cardo C, Lyde

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H, Cosset JM: In vitro radiation-induced apoptosis and early response to low-dose radiotherapy in non-Hodgkin’s lymphomas.

Radiother Oncol 1998, 46: 185–191.PubMedCrossRef 23. Rottey S, Loose D, Vakaet L, Lahorte C, Vermeersch H, Van Belle S, Wiele C: 99m Tc-HYNIC Annexin-V imaging of tumors and its relationship to response to radiotherapy and/or chemotherapy. Quart J Nucl Med Mol Imag 2007, 51: 182–188. 24. Hoebers FJ, Kartachova M, de Bois selleck chemicals llc J, Brekel M, van Tinteren H, van Herk M, Rasch CRN, Valdés ORA, Verheij M: 99m Tc Hynic-rh-Annexin V scintigraphy for in vivo imaging of apoptosis in patients with head and neck cancer treated with chemoradiotherapy. Eur J Nucl Med Mol Imaging 2008, 35: 509–518.PubMedCrossRef Competing interests The authors report no conflicts of interest. The authors alone are responsible

for the content and writing of the paper. Authors’ contributions GM-F and ZY-Q carried out the in vivo and in vitro studies, participated P-type ATPase in drafting the manuscript. RT and LL participated in the In vivo imaging. GL-M carried out the establishment of tumor model. XF participated in designing and the execution of the experiment. YB-H and SB provided irradiation. WJ conceived and designed the study, helped analysing data and drafting the manuscript. All authors read and approved the final manuscript.”
“Introduction Prostate cancer (Pca) is the most frequently diagnosed malignancy and the second leading cause of cancer death among men in Western countries [1]. Notwithstanding the importance of this tumor, its causes remain largely unknown. Age, family history, race and country of residence are the only established risk factors, but they explain only a small proportion of Pca incidence [2]. A considerable number of studies have addressed prostate sensitivity to androgens in relation to outcomes varying from normal prostate growth to benign and malignant diseases [3–5]. However, the role played by Mdivi1 nmr estrogens in the pathogenesis of a wide spectrum of prostate physiologic and pathologic conditions is drawing increasing attention [6]. In regards to Pca, experimental data from studies conducted in Noble (NBL) rats strongly suggest a critical role for estrogens in prostate carcinogenesis.

No apparent increase in number of phase dark spores was observed

No apparent increase in Eltanexor in vivo number of phase dark spores was observed for spores of the deletion mutant (NVH-1307) supplemented with L-alanine, or the negative controls. Together with the absorbance measurements, this shows that the introduced disruption of the gerAA gene abolishes

the ability of B. licheniformis MW3 to use L-alanine as a germinant. The fact that the NVH-1311 complementation mutant showed a similar L-alanine triggered germination phenotype as the wild type spores, supports the hypothesis that an undisrupted copy of the gerAA, gerAB and gerAC genes, with flanking elements, are required for normal germination of B. licheniformis MW3 at these conditions. These findings were also supported by experiments performed with an alternative germination buffer; 50 mM Tris HCl pH 7.4 10 mM KCl (E. Klufterud, C. From; see more unpublished results). Figure 1 Germination of B. licheniformis with L-alanine. Germination is followed as a change in initial absorbance at 600 nm (A600) of phase bright spores in K-phosphate buffer

pH 7.2 at 30 °C after addition of 100 mM L-alanine. Complete germination (>99% phase Quisinostat ic50 dark spores as observed by phase contrast microscopy) was observed at ~40% of initial A600. The results shown are representative of experiments performed in duplicate on two individual spore batches repeated at least twice. Figure 2 Phase contrast images of B. licheniformis spores following L-alanine germination. Phase contrast images (100 x) showing B. licheniformis spores after 3 hours germination at 30 °C with 100 mM L-alanine or negative control (MQ) in K-phosphatebuffer pH 7.2. The displayed images are representative of experiments performed in duplicate on two individual spore batches repeated at least twice. An earlier study where germination in seven strains of B. licheniformis was investigated, showed that out of 24 amino acids tested, only L-alanine, L-cysteine and L-valine markedly stimulated germination [46].

In general, a greater germination response with L-alanine than with L-cysteine and L-valine was observed [46]. To assay the germination response of MW3, NVH-1307 click here and NVH-1311 to several amino acids, casein hydrolysate was used. Casein hydrolysate consists of a mixture of amino acids made from acid hydrolyzation of the milk protein casein and has been used as a germinant for Clostridium bifermentans and B. cereus in earlier studies [61–63]. In our study, casein hydrolysate proved to be a potent germinant for B. licheniformis, giving a rapid germination response (~70% phase dark spores as visualised by phase contrast microscopy) both for the wild type MW3 and the complementation mutant NVH-1311.